Index

_

__init__() (cuqi.array.CUQIarray method), [1] (cuqi.density.Density method), [1] (cuqi.density.EvaluatedDensity method), [1] (cuqi.distribution.Beta method), [1] (cuqi.distribution.Cauchy method), [1] (cuqi.distribution.CMRF method), [1] (cuqi.distribution.Distribution method), [1] (cuqi.distribution.DistributionGallery method), [1] (cuqi.distribution.Gamma method), [1] (cuqi.distribution.Gaussian method), [1] (cuqi.distribution.GMRF method), [1] (cuqi.distribution.InverseGamma method), [1] (cuqi.distribution.JointDistribution method), [1] (cuqi.distribution.JointGaussianSqrtPrec method), [1] (cuqi.distribution.Laplace method), [1] (cuqi.distribution.LMRF method), [1] (cuqi.distribution.Lognormal method), [1] (cuqi.distribution.ModifiedHalfNormal method), [1] (cuqi.distribution.MultipleLikelihoodPosterior method), [1] (cuqi.distribution.Normal method), [1] (cuqi.distribution.Posterior method), [1] (cuqi.distribution.SmoothedLaplace method), [1] (cuqi.distribution.TruncatedNormal method), [1] (cuqi.distribution.Uniform method), [1] (cuqi.distribution.UserDefinedDistribution method), [1] (cuqi.experimental.mcmc.Conjugate method), [1] (cuqi.experimental.mcmc.ConjugateApprox method), [1] (cuqi.experimental.mcmc.CWMH method), [1] (cuqi.experimental.mcmc.Direct method), [1] (cuqi.experimental.mcmc.HybridGibbs method), [1] (cuqi.experimental.mcmc.LinearRTO method), [1] (cuqi.experimental.mcmc.MALA method), [1] (cuqi.experimental.mcmc.MH method), [1] (cuqi.experimental.mcmc.MYULA method), [1] (cuqi.experimental.mcmc.NUTS method), [1] (cuqi.experimental.mcmc.PCN method), [1] (cuqi.experimental.mcmc.PnPULA method), [1] (cuqi.experimental.mcmc.ProposalBasedSampler method), [1] (cuqi.experimental.mcmc.RegularizedLinearRTO method), [1] (cuqi.experimental.mcmc.Sampler method), [1] (cuqi.experimental.mcmc.UGLA method), [1] (cuqi.experimental.mcmc.ULA method), [1] (cuqi.geometry.Continuous method), [1] (cuqi.geometry.Continuous1D method), [1] (cuqi.geometry.Continuous2D method), [1] (cuqi.geometry.CustomKL method), [1] (cuqi.geometry.Discrete method), [1] (cuqi.geometry.Geometry method), [1] (cuqi.geometry.Image2D method), [1] (cuqi.geometry.KLExpansion method), [1] (cuqi.geometry.KLExpansion_Full method), [1] (cuqi.geometry.MappedGeometry method), [1] (cuqi.geometry.StepExpansion method), [1] (cuqi.implicitprior.ConstrainedGaussian method), [1] (cuqi.implicitprior.ConstrainedGMRF method), [1] (cuqi.implicitprior.MoreauYoshidaPrior method), [1] (cuqi.implicitprior.NonnegativeGaussian method), [1] (cuqi.implicitprior.NonnegativeGMRF method), [1] (cuqi.implicitprior.RegularizedGaussian method), [1] (cuqi.implicitprior.RegularizedGMRF method), [1] (cuqi.implicitprior.RegularizedUnboundedUniform method), [1] (cuqi.implicitprior.RestorationPrior method), [1] (cuqi.likelihood.Likelihood method), [1] (cuqi.likelihood.UserDefinedLikelihood method), [1] (cuqi.model.AffineModel method), [1] (cuqi.model.LinearModel method), [1] (cuqi.model.Model method), [1] (cuqi.model.PDEModel method), [1] (cuqi.operator.FirstOrderFiniteDifference method), [1] (cuqi.operator.Operator method), [1] (cuqi.operator.PrecisionFiniteDifference method), [1] (cuqi.operator.SecondOrderFiniteDifference method), [1] (cuqi.pde.LinearPDE method), [1] (cuqi.pde.PDE method), [1] (cuqi.pde.SteadyStateLinearPDE method), [1] (cuqi.pde.TimeDependentLinearPDE method), [1] (cuqi.problem.BayesianProblem method), [1] (cuqi.sampler.Conjugate method), [1] (cuqi.sampler.ConjugateApprox method), [1] (cuqi.sampler.CWMH method), [1] (cuqi.sampler.Gibbs method), [1] (cuqi.sampler.LinearRTO method), [1] (cuqi.sampler.MALA method), [1] (cuqi.sampler.MH method), [1] (cuqi.sampler.NUTS method), [1] (cuqi.sampler.pCN method), [1] (cuqi.sampler.ProposalBasedSampler method), [1] (cuqi.sampler.RegularizedLinearRTO method), [1] (cuqi.sampler.Sampler method), [1] (cuqi.sampler.UGLA method), [1] (cuqi.sampler.ULA method), [1] (cuqi.samples.JointSamples method), [1] (cuqi.samples.Samples method), [1] (cuqi.solver.ADMM method), [1] (cuqi.solver.CGLS method), [1] (cuqi.solver.FISTA method), [1] (cuqi.solver.L_BFGS_B method), [1] (cuqi.solver.LM method), [1] (cuqi.solver.LS method), [1] (cuqi.solver.maximize method), [1] (cuqi.solver.minimize method), [1] (cuqi.solver.PDHG method), [1] (cuqi.testproblem.Abel1D method), [1] (cuqi.testproblem.Deconvolution1D method), [1] (cuqi.testproblem.Deconvolution2D method), [1] (cuqi.testproblem.Heat1D method), [1] (cuqi.testproblem.Poisson1D method), [1] (cuqi.testproblem.WangCubic method), [1] (cuqi.utilities.ProblemInfo method), [1]

A

Abel1D (class in cuqi.testproblem) adjoint() (cuqi.model.LinearModel method) ADMM (class in cuqi.solver) AffineModel (class in cuqi.model) ALIGNED (in module cuqi.array) all() (cuqi.array.CUQIarray method) alpha (cuqi.distribution.ModifiedHalfNormal property) any() (cuqi.array.CUQIarray method) approx_derivative() (in module cuqi.utilities) approx_gradient() (in module cuqi.utilities) argmax() (cuqi.array.CUQIarray method)

argmin() (cuqi.array.CUQIarray method) argpartition() (cuqi.array.CUQIarray method) argsort() (cuqi.array.CUQIarray method) assemble() (cuqi.pde.LinearPDE method) (cuqi.pde.PDE method) (cuqi.pde.SteadyStateLinearPDE method) (cuqi.pde.TimeDependentLinearPDE method) assemble_step() (cuqi.pde.TimeDependentLinearPDE method) astronaut() (in module cuqi.data) astype() (cuqi.array.CUQIarray method) axis_labels (cuqi.geometry.MappedGeometry property)

B

base (cuqi.array.CUQIarray attribute) BayesianProblem (class in cuqi.problem) bc_type (cuqi.operator.FirstOrderFiniteDifference property) (cuqi.operator.PrecisionFiniteDifference property) (cuqi.operator.SecondOrderFiniteDifference property) BEHAVED (in module cuqi.array)

Beta (class in cuqi.distribution) beta (cuqi.distribution.ModifiedHalfNormal property) (cuqi.distribution.SmoothedLaplace property) burnthin() (cuqi.samples.JointSamples method) (cuqi.samples.Samples method) byteswap() (cuqi.array.CUQIarray method)

C

C_CONTIGUOUS (cuqi.array.CUQIarray attribute) camera() (in module cuqi.data) CARRAY (in module cuqi.array) cat() (in module cuqi.data) Cauchy (class in cuqi.distribution) cdf() (cuqi.distribution.Beta method) (cuqi.distribution.Cauchy method) (cuqi.distribution.Gamma method) (cuqi.distribution.Gaussian method) (cuqi.distribution.InverseGamma method) (cuqi.distribution.Normal method) CGLS (class in cuqi.solver) check_if_conditional_from_attr() (in module cuqi.utilities) choose() (cuqi.array.CUQIarray method) ci_width() (cuqi.samples.Samples method) clear() (cuqi.samples.JointSamples method) clip() (cuqi.array.CUQIarray method) CMRF (class in cuqi.distribution) coefs (cuqi.geometry.KLExpansion property) (cuqi.geometry.KLExpansion_Full property) coefs_inverse (cuqi.geometry.KLExpansion property) compress() (cuqi.array.CUQIarray method) compute_ci() (cuqi.samples.Samples method) compute_cov() (cuqi.distribution.Gaussian method) compute_ess() (cuqi.samples.Samples method) compute_rhat() (cuqi.samples.Samples method) conj() (cuqi.array.CUQIarray method) Conjugate (class in cuqi.experimental.mcmc) (class in cuqi.sampler) conjugate() (cuqi.array.CUQIarray method) ConjugateApprox (class in cuqi.experimental.mcmc) (class in cuqi.sampler) ConstrainedGaussian (class in cuqi.implicitprior) ConstrainedGMRF (class in cuqi.implicitprior) constraint_options() (cuqi.implicitprior.ConstrainedGaussian static method) (cuqi.implicitprior.ConstrainedGMRF static method) (cuqi.implicitprior.NonnegativeGaussian static method) (cuqi.implicitprior.NonnegativeGMRF static method) (cuqi.implicitprior.RegularizedGaussian static method) (cuqi.implicitprior.RegularizedGMRF static method) (cuqi.implicitprior.RegularizedUnboundedUniform static method) Continuous (class in cuqi.geometry) Continuous1D (class in cuqi.geometry) Continuous2D (class in cuqi.geometry) cookie() (in module cuqi.data) copy() (cuqi.array.CUQIarray method) (cuqi.samples.JointSamples method) cov (cuqi.distribution.Gaussian property) (cuqi.implicitprior.ConstrainedGaussian property) (cuqi.implicitprior.ConstrainedGMRF property) (cuqi.implicitprior.NonnegativeGaussian property) (cuqi.implicitprior.NonnegativeGMRF property) (cuqi.implicitprior.RegularizedGaussian property) (cuqi.implicitprior.RegularizedGMRF property) (cuqi.implicitprior.RegularizedUnboundedUniform property)

ctypes (cuqi.array.CUQIarray attribute) cumprod() (cuqi.array.CUQIarray method) cumsum() (cuqi.array.CUQIarray method) cuqi module cuqi.array module cuqi.config module cuqi.data module cuqi.density module cuqi.diagnostics module cuqi.distribution module cuqi.experimental module cuqi.experimental.mcmc module cuqi.geometry module cuqi.implicitprior module cuqi.likelihood module cuqi.model module cuqi.operator module cuqi.pde module cuqi.problem module cuqi.sampler module cuqi.samples module cuqi.solver module cuqi.testproblem module cuqi.utilities module CUQIarray (class in cuqi.array) CustomKL (class in cuqi.geometry) CWMH (class in cuqi.experimental.mcmc) (class in cuqi.sampler)

D

data (cuqi.array.CUQIarray attribute) (cuqi.distribution.Posterior property) (cuqi.problem.BayesianProblem property) (cuqi.testproblem.Abel1D attribute) (cuqi.testproblem.Abel1D property) (cuqi.testproblem.Deconvolution1D property) (cuqi.testproblem.Deconvolution2D attribute) (cuqi.testproblem.Deconvolution2D property) (cuqi.testproblem.Heat1D attribute) (cuqi.testproblem.Heat1D property) (cuqi.testproblem.Poisson1D attribute) (cuqi.testproblem.Poisson1D property) (cuqi.testproblem.WangCubic property) decay_rate (cuqi.geometry.KLExpansion property) Deconvolution1D (class in cuqi.testproblem) Deconvolution2D (class in cuqi.testproblem) Density (class in cuqi.density) diagnostics() (cuqi.samples.Samples method) diagonal() (cuqi.array.CUQIarray method) dim (cuqi.density.Density property) (cuqi.density.EvaluatedDensity property) (cuqi.distribution.Beta property) (cuqi.distribution.Cauchy property) (cuqi.distribution.CMRF property) (cuqi.distribution.Distribution property) (cuqi.distribution.DistributionGallery property) (cuqi.distribution.Gamma property) (cuqi.distribution.Gaussian property) (cuqi.distribution.GMRF property) (cuqi.distribution.InverseGamma property) (cuqi.distribution.JointDistribution property) (cuqi.distribution.JointGaussianSqrtPrec property) (cuqi.distribution.Laplace property) (cuqi.distribution.LMRF property) (cuqi.distribution.Lognormal property) (cuqi.distribution.ModifiedHalfNormal property) (cuqi.distribution.MultipleLikelihoodPosterior property) (cuqi.distribution.Normal property) (cuqi.distribution.Posterior property) (cuqi.distribution.SmoothedLaplace property) (cuqi.distribution.TruncatedNormal property) (cuqi.distribution.Uniform property) (cuqi.distribution.UserDefinedDistribution property) (cuqi.experimental.mcmc.Conjugate property) (cuqi.experimental.mcmc.ConjugateApprox property) (cuqi.experimental.mcmc.CWMH property) (cuqi.experimental.mcmc.Direct property) (cuqi.experimental.mcmc.LinearRTO property) (cuqi.experimental.mcmc.MALA property) (cuqi.experimental.mcmc.MH property) (cuqi.experimental.mcmc.MYULA property) (cuqi.experimental.mcmc.NUTS property) (cuqi.experimental.mcmc.PCN property) (cuqi.experimental.mcmc.PnPULA property) (cuqi.experimental.mcmc.ProposalBasedSampler property) (cuqi.experimental.mcmc.RegularizedLinearRTO property) (cuqi.experimental.mcmc.Sampler property) (cuqi.experimental.mcmc.UGLA property) (cuqi.experimental.mcmc.ULA property) (cuqi.implicitprior.ConstrainedGaussian property) (cuqi.implicitprior.ConstrainedGMRF property) (cuqi.implicitprior.MoreauYoshidaPrior property) (cuqi.implicitprior.NonnegativeGaussian property) (cuqi.implicitprior.NonnegativeGMRF property) (cuqi.implicitprior.RegularizedGaussian property) (cuqi.implicitprior.RegularizedGMRF property) (cuqi.implicitprior.RegularizedUnboundedUniform property) (cuqi.implicitprior.RestorationPrior property) (cuqi.likelihood.Likelihood property) (cuqi.likelihood.UserDefinedLikelihood property) (cuqi.operator.FirstOrderFiniteDifference property) (cuqi.operator.PrecisionFiniteDifference property) (cuqi.operator.SecondOrderFiniteDifference property) (cuqi.sampler.CWMH property) (cuqi.sampler.LinearRTO property) (cuqi.sampler.MALA property) (cuqi.sampler.MH property) (cuqi.sampler.NUTS property) (cuqi.sampler.pCN property) (cuqi.sampler.ProposalBasedSampler property) (cuqi.sampler.RegularizedLinearRTO property) (cuqi.sampler.Sampler property) (cuqi.sampler.UGLA property) (cuqi.sampler.ULA property)

Direct (class in cuqi.experimental.mcmc) disable_FD() (cuqi.density.Density method) (cuqi.density.EvaluatedDensity method) (cuqi.distribution.Beta method) (cuqi.distribution.Cauchy method) (cuqi.distribution.CMRF method) (cuqi.distribution.Distribution method) (cuqi.distribution.DistributionGallery method) (cuqi.distribution.Gamma method) (cuqi.distribution.Gaussian method) (cuqi.distribution.GMRF method) (cuqi.distribution.InverseGamma method) (cuqi.distribution.JointGaussianSqrtPrec method) (cuqi.distribution.Laplace method) (cuqi.distribution.LMRF method) (cuqi.distribution.Lognormal method) (cuqi.distribution.ModifiedHalfNormal method) (cuqi.distribution.MultipleLikelihoodPosterior method) (cuqi.distribution.Normal method) (cuqi.distribution.Posterior method) (cuqi.distribution.SmoothedLaplace method) (cuqi.distribution.TruncatedNormal method) (cuqi.distribution.Uniform method) (cuqi.distribution.UserDefinedDistribution method) (cuqi.implicitprior.ConstrainedGaussian method) (cuqi.implicitprior.ConstrainedGMRF method) (cuqi.implicitprior.MoreauYoshidaPrior method) (cuqi.implicitprior.NonnegativeGaussian method) (cuqi.implicitprior.NonnegativeGMRF method) (cuqi.implicitprior.RegularizedGaussian method) (cuqi.implicitprior.RegularizedGMRF method) (cuqi.implicitprior.RegularizedUnboundedUniform method) (cuqi.implicitprior.RestorationPrior method) (cuqi.likelihood.Likelihood method) Discrete (class in cuqi.geometry) Distribution (class in cuqi.distribution) DistributionGallery (class in cuqi.distribution) domain_dim (cuqi.model.AffineModel property) (cuqi.model.LinearModel property) (cuqi.model.Model property) (cuqi.model.PDEModel property) dot() (cuqi.array.CUQIarray method) dtype (cuqi.array.CUQIarray attribute) dump() (cuqi.array.CUQIarray method) dumps() (cuqi.array.CUQIarray method)

E

eigval (cuqi.geometry.CustomKL property) eigvec (cuqi.geometry.CustomKL property) enable_FD() (cuqi.density.Density method) (cuqi.density.EvaluatedDensity method) (cuqi.distribution.Beta method) (cuqi.distribution.Cauchy method) (cuqi.distribution.CMRF method) (cuqi.distribution.Distribution method) (cuqi.distribution.DistributionGallery method) (cuqi.distribution.Gamma method) (cuqi.distribution.Gaussian method) (cuqi.distribution.GMRF method) (cuqi.distribution.InverseGamma method) (cuqi.distribution.JointGaussianSqrtPrec method) (cuqi.distribution.Laplace method) (cuqi.distribution.LMRF method) (cuqi.distribution.Lognormal method) (cuqi.distribution.ModifiedHalfNormal method) (cuqi.distribution.MultipleLikelihoodPosterior method) (cuqi.distribution.Normal method) (cuqi.distribution.Posterior method) (cuqi.distribution.SmoothedLaplace method) (cuqi.distribution.TruncatedNormal method) (cuqi.distribution.Uniform method) (cuqi.distribution.UserDefinedDistribution method) (cuqi.implicitprior.ConstrainedGaussian method) (cuqi.implicitprior.ConstrainedGMRF method) (cuqi.implicitprior.MoreauYoshidaPrior method) (cuqi.implicitprior.NonnegativeGaussian method) (cuqi.implicitprior.NonnegativeGMRF method) (cuqi.implicitprior.RegularizedGaussian method) (cuqi.implicitprior.RegularizedGMRF method) (cuqi.implicitprior.RegularizedUnboundedUniform method) (cuqi.implicitprior.RestorationPrior method) (cuqi.likelihood.Likelihood method)

EvaluatedDensity (class in cuqi.density) exactData (cuqi.testproblem.Abel1D attribute) (cuqi.testproblem.Deconvolution2D attribute) (cuqi.testproblem.Heat1D attribute) (cuqi.testproblem.Poisson1D attribute) (cuqi.utilities.ProblemInfo attribute) exactSolution (cuqi.testproblem.Abel1D attribute) (cuqi.testproblem.Deconvolution2D attribute) (cuqi.testproblem.Heat1D attribute) (cuqi.testproblem.Poisson1D attribute) (cuqi.utilities.ProblemInfo attribute)

F

F_CONTIGUOUS (in module cuqi.array) FARRAY (in module cuqi.array) FD_enabled (cuqi.density.Density property) (cuqi.density.EvaluatedDensity property) (cuqi.distribution.Beta property) (cuqi.distribution.Cauchy property) (cuqi.distribution.CMRF property) (cuqi.distribution.Distribution property) (cuqi.distribution.DistributionGallery property) (cuqi.distribution.Gamma property) (cuqi.distribution.Gaussian property) (cuqi.distribution.GMRF property) (cuqi.distribution.InverseGamma property) (cuqi.distribution.JointGaussianSqrtPrec property) (cuqi.distribution.Laplace property) (cuqi.distribution.LMRF property) (cuqi.distribution.Lognormal property) (cuqi.distribution.ModifiedHalfNormal property) (cuqi.distribution.MultipleLikelihoodPosterior property) (cuqi.distribution.Normal property) (cuqi.distribution.Posterior property) (cuqi.distribution.SmoothedLaplace property) (cuqi.distribution.TruncatedNormal property) (cuqi.distribution.Uniform property) (cuqi.distribution.UserDefinedDistribution property) (cuqi.implicitprior.ConstrainedGaussian property) (cuqi.implicitprior.ConstrainedGMRF property) (cuqi.implicitprior.MoreauYoshidaPrior property) (cuqi.implicitprior.NonnegativeGaussian property) (cuqi.implicitprior.NonnegativeGMRF property) (cuqi.implicitprior.RegularizedGaussian property) (cuqi.implicitprior.RegularizedGMRF property) (cuqi.implicitprior.RegularizedUnboundedUniform property) (cuqi.implicitprior.RestorationPrior property) (cuqi.likelihood.Likelihood property) FD_epsilon (cuqi.density.Density property) (cuqi.density.EvaluatedDensity property) (cuqi.distribution.Beta property) (cuqi.distribution.Cauchy property) (cuqi.distribution.CMRF property) (cuqi.distribution.Distribution property) (cuqi.distribution.DistributionGallery property) (cuqi.distribution.Gamma property) (cuqi.distribution.Gaussian property) (cuqi.distribution.GMRF property) (cuqi.distribution.InverseGamma property) (cuqi.distribution.JointGaussianSqrtPrec property) (cuqi.distribution.Laplace property) (cuqi.distribution.LMRF property) (cuqi.distribution.Lognormal property) (cuqi.distribution.ModifiedHalfNormal property) (cuqi.distribution.MultipleLikelihoodPosterior property) (cuqi.distribution.Normal property) (cuqi.distribution.Posterior property) (cuqi.distribution.SmoothedLaplace property) (cuqi.distribution.TruncatedNormal property) (cuqi.distribution.Uniform property) (cuqi.distribution.UserDefinedDistribution property) (cuqi.implicitprior.ConstrainedGaussian property) (cuqi.implicitprior.ConstrainedGMRF property) (cuqi.implicitprior.MoreauYoshidaPrior property) (cuqi.implicitprior.NonnegativeGaussian property) (cuqi.implicitprior.NonnegativeGMRF property) (cuqi.implicitprior.RegularizedGaussian property) (cuqi.implicitprior.RegularizedGMRF property) (cuqi.implicitprior.RegularizedUnboundedUniform property) (cuqi.implicitprior.RestorationPrior property) (cuqi.likelihood.Likelihood property) fill() (cuqi.array.CUQIarray method) find_valid_samplers() (in module cuqi.experimental.mcmc) FirstOrderFiniteDifference (class in cuqi.operator) FISTA (class in cuqi.solver) flags (cuqi.array.CUQIarray attribute) flat (cuqi.array.CUQIarray attribute) flatten() (cuqi.array.CUQIarray method) FNC (in module cuqi.array) FORC (in module cuqi.array) force_ndarray() (in module cuqi.utilities) forward() (cuqi.model.AffineModel method) (cuqi.model.LinearModel method) (cuqi.model.Model method) (cuqi.model.PDEModel method)

fromkeys() (cuqi.samples.JointSamples method) fun2par() (cuqi.geometry.Continuous method) (cuqi.geometry.Continuous1D method) (cuqi.geometry.Continuous2D method) (cuqi.geometry.CustomKL method) (cuqi.geometry.Discrete method) (cuqi.geometry.Geometry method) (cuqi.geometry.Image2D method) (cuqi.geometry.KLExpansion method) (cuqi.geometry.KLExpansion_Full method) (cuqi.geometry.MappedGeometry method) (cuqi.geometry.StepExpansion method) fun2vec() (cuqi.geometry.Continuous method) (cuqi.geometry.Continuous1D method) (cuqi.geometry.Continuous2D method) (cuqi.geometry.CustomKL method) (cuqi.geometry.Discrete method) (cuqi.geometry.Geometry method) (cuqi.geometry.Image2D method) (cuqi.geometry.KLExpansion method) (cuqi.geometry.KLExpansion_Full method) (cuqi.geometry.MappedGeometry method) (cuqi.geometry.StepExpansion method) fun_dim (cuqi.geometry.Continuous property) (cuqi.geometry.Continuous1D property) (cuqi.geometry.Continuous2D property) (cuqi.geometry.CustomKL property) (cuqi.geometry.Discrete property) (cuqi.geometry.Geometry property) (cuqi.geometry.Image2D property) (cuqi.geometry.KLExpansion property) (cuqi.geometry.KLExpansion_Full property) (cuqi.geometry.MappedGeometry property) (cuqi.geometry.StepExpansion property) fun_is_array (cuqi.geometry.Continuous property) (cuqi.geometry.Continuous1D property) (cuqi.geometry.Continuous2D property) (cuqi.geometry.CustomKL property) (cuqi.geometry.Discrete property) (cuqi.geometry.Geometry property) (cuqi.geometry.Image2D property) (cuqi.geometry.KLExpansion property) (cuqi.geometry.KLExpansion_Full property) (cuqi.geometry.MappedGeometry property) (cuqi.geometry.StepExpansion property) fun_shape (cuqi.geometry.Continuous property) (cuqi.geometry.Continuous1D property) (cuqi.geometry.Continuous2D property) (cuqi.geometry.CustomKL property) (cuqi.geometry.Discrete property) (cuqi.geometry.Geometry property) (cuqi.geometry.Image2D property) (cuqi.geometry.KLExpansion property) (cuqi.geometry.KLExpansion_Full property) (cuqi.geometry.MappedGeometry property) (cuqi.geometry.StepExpansion property) (cuqi.likelihood.Likelihood property) funvals (cuqi.array.CUQIarray property) (cuqi.samples.Samples property) funvec_dim (cuqi.geometry.Continuous property) (cuqi.geometry.Continuous1D property) (cuqi.geometry.Continuous2D property) (cuqi.geometry.CustomKL property) (cuqi.geometry.Discrete property) (cuqi.geometry.Geometry property) (cuqi.geometry.Image2D property) (cuqi.geometry.KLExpansion property) (cuqi.geometry.KLExpansion_Full property) (cuqi.geometry.MappedGeometry property) (cuqi.geometry.StepExpansion property) funvec_shape (cuqi.geometry.Continuous property) (cuqi.geometry.Continuous1D property) (cuqi.geometry.Continuous2D property) (cuqi.geometry.CustomKL property) (cuqi.geometry.Discrete property) (cuqi.geometry.Geometry property) (cuqi.geometry.Image2D property) (cuqi.geometry.KLExpansion property) (cuqi.geometry.KLExpansion_Full property) (cuqi.geometry.MappedGeometry property) (cuqi.geometry.StepExpansion property)

G

Gamma (class in cuqi.distribution) gamma (cuqi.distribution.ModifiedHalfNormal property) Gaussian (class in cuqi.distribution) gaussian (cuqi.implicitprior.ConstrainedGaussian property) (cuqi.implicitprior.ConstrainedGMRF property) (cuqi.implicitprior.NonnegativeGaussian property) (cuqi.implicitprior.NonnegativeGMRF property) (cuqi.implicitprior.RegularizedGaussian property) (cuqi.implicitprior.RegularizedGMRF property) (cuqi.implicitprior.RegularizedUnboundedUniform property) Geometry (class in cuqi.geometry) geometry (cuqi.distribution.Beta property) (cuqi.distribution.Cauchy property) (cuqi.distribution.CMRF property) (cuqi.distribution.Distribution property) (cuqi.distribution.DistributionGallery property) (cuqi.distribution.Gamma property) (cuqi.distribution.Gaussian property) (cuqi.distribution.GMRF property) (cuqi.distribution.InverseGamma property) (cuqi.distribution.JointDistribution property) (cuqi.distribution.JointGaussianSqrtPrec property) (cuqi.distribution.Laplace property) (cuqi.distribution.LMRF property) (cuqi.distribution.Lognormal property) (cuqi.distribution.ModifiedHalfNormal property) (cuqi.distribution.MultipleLikelihoodPosterior property) (cuqi.distribution.Normal property) (cuqi.distribution.Posterior property) (cuqi.distribution.SmoothedLaplace property) (cuqi.distribution.TruncatedNormal property) (cuqi.distribution.Uniform property) (cuqi.distribution.UserDefinedDistribution property) (cuqi.experimental.mcmc.Conjugate property) (cuqi.experimental.mcmc.ConjugateApprox property) (cuqi.experimental.mcmc.CWMH property) (cuqi.experimental.mcmc.Direct property) (cuqi.experimental.mcmc.LinearRTO property) (cuqi.experimental.mcmc.MALA property) (cuqi.experimental.mcmc.MH property) (cuqi.experimental.mcmc.MYULA property) (cuqi.experimental.mcmc.NUTS property) (cuqi.experimental.mcmc.PCN property) (cuqi.experimental.mcmc.PnPULA property) (cuqi.experimental.mcmc.ProposalBasedSampler property) (cuqi.experimental.mcmc.RegularizedLinearRTO property) (cuqi.experimental.mcmc.Sampler property) (cuqi.experimental.mcmc.UGLA property) (cuqi.experimental.mcmc.ULA property) (cuqi.implicitprior.ConstrainedGaussian property) (cuqi.implicitprior.ConstrainedGMRF property) (cuqi.implicitprior.MoreauYoshidaPrior property) (cuqi.implicitprior.NonnegativeGaussian property) (cuqi.implicitprior.NonnegativeGMRF property) (cuqi.implicitprior.RegularizedGaussian property) (cuqi.implicitprior.RegularizedGMRF property) (cuqi.implicitprior.RegularizedUnboundedUniform property) (cuqi.implicitprior.RestorationPrior property) (cuqi.likelihood.Likelihood property) (cuqi.sampler.CWMH property) (cuqi.sampler.LinearRTO property) (cuqi.sampler.MALA property) (cuqi.sampler.MH property) (cuqi.sampler.NUTS property) (cuqi.sampler.pCN property) (cuqi.sampler.ProposalBasedSampler property) (cuqi.sampler.RegularizedLinearRTO property) (cuqi.sampler.Sampler property) (cuqi.sampler.UGLA property) (cuqi.sampler.ULA property) (cuqi.samples.Samples property) get() (cuqi.samples.JointSamples method) get_components() (cuqi.problem.BayesianProblem method) (cuqi.testproblem.Abel1D method) (cuqi.testproblem.Deconvolution1D method) (cuqi.testproblem.Deconvolution2D method) (cuqi.testproblem.Heat1D method) (cuqi.testproblem.Poisson1D method) (cuqi.testproblem.WangCubic method) get_conditioning_variables() (cuqi.distribution.Beta method) (cuqi.distribution.Cauchy method) (cuqi.distribution.CMRF method) (cuqi.distribution.Distribution method) (cuqi.distribution.DistributionGallery method) (cuqi.distribution.Gamma method) (cuqi.distribution.Gaussian method) (cuqi.distribution.GMRF method) (cuqi.distribution.InverseGamma method) (cuqi.distribution.JointGaussianSqrtPrec method) (cuqi.distribution.Laplace method) (cuqi.distribution.LMRF method) (cuqi.distribution.Lognormal method) (cuqi.distribution.ModifiedHalfNormal method) (cuqi.distribution.MultipleLikelihoodPosterior method) (cuqi.distribution.Normal method) (cuqi.distribution.Posterior method) (cuqi.distribution.SmoothedLaplace method) (cuqi.distribution.TruncatedNormal method) (cuqi.distribution.Uniform method) (cuqi.distribution.UserDefinedDistribution method) (cuqi.implicitprior.ConstrainedGaussian method) (cuqi.implicitprior.ConstrainedGMRF method) (cuqi.implicitprior.MoreauYoshidaPrior method) (cuqi.implicitprior.NonnegativeGaussian method) (cuqi.implicitprior.NonnegativeGMRF method) (cuqi.implicitprior.RegularizedGaussian method) (cuqi.implicitprior.RegularizedGMRF method) (cuqi.implicitprior.RegularizedUnboundedUniform method) (cuqi.implicitprior.RestorationPrior method) get_density() (cuqi.distribution.JointDistribution method) (cuqi.distribution.MultipleLikelihoodPosterior method) get_direct_attributes() (in module cuqi.utilities) get_history() (cuqi.experimental.mcmc.Conjugate method) (cuqi.experimental.mcmc.ConjugateApprox method) (cuqi.experimental.mcmc.CWMH method) (cuqi.experimental.mcmc.Direct method) (cuqi.experimental.mcmc.LinearRTO method) (cuqi.experimental.mcmc.MALA method) (cuqi.experimental.mcmc.MH method) (cuqi.experimental.mcmc.MYULA method) (cuqi.experimental.mcmc.NUTS method) (cuqi.experimental.mcmc.PCN method) (cuqi.experimental.mcmc.PnPULA method) (cuqi.experimental.mcmc.ProposalBasedSampler method) (cuqi.experimental.mcmc.RegularizedLinearRTO method) (cuqi.experimental.mcmc.Sampler method) (cuqi.experimental.mcmc.UGLA method) (cuqi.experimental.mcmc.ULA method) get_indirect_variables() (in module cuqi.utilities) get_matrix() (cuqi.model.LinearModel method) (cuqi.operator.FirstOrderFiniteDifference method) (cuqi.operator.Operator method) (cuqi.operator.PrecisionFiniteDifference method) (cuqi.operator.SecondOrderFiniteDifference method) get_mutable_variables() (cuqi.distribution.Beta method) (cuqi.distribution.Cauchy method) (cuqi.distribution.CMRF method) (cuqi.distribution.Distribution method) (cuqi.distribution.DistributionGallery method) (cuqi.distribution.Gamma method) (cuqi.distribution.Gaussian method) (cuqi.distribution.GMRF method) (cuqi.distribution.InverseGamma method) (cuqi.distribution.JointGaussianSqrtPrec method) (cuqi.distribution.Laplace method) (cuqi.distribution.LMRF method) (cuqi.distribution.Lognormal method) (cuqi.distribution.ModifiedHalfNormal method) (cuqi.distribution.MultipleLikelihoodPosterior method) (cuqi.distribution.Normal method) (cuqi.distribution.Posterior method) (cuqi.distribution.SmoothedLaplace method) (cuqi.distribution.TruncatedNormal method) (cuqi.distribution.Uniform method) (cuqi.distribution.UserDefinedDistribution method) (cuqi.implicitprior.ConstrainedGaussian method) (cuqi.implicitprior.ConstrainedGMRF method) (cuqi.implicitprior.MoreauYoshidaPrior method) (cuqi.implicitprior.NonnegativeGaussian method) (cuqi.implicitprior.NonnegativeGMRF method) (cuqi.implicitprior.RegularizedGaussian method) (cuqi.implicitprior.RegularizedGMRF method) (cuqi.implicitprior.RegularizedUnboundedUniform method) (cuqi.implicitprior.RestorationPrior method)

get_non_default_args() (in module cuqi.utilities) get_parameter_names() (cuqi.density.Density method) (cuqi.density.EvaluatedDensity method) (cuqi.distribution.Beta method) (cuqi.distribution.Cauchy method) (cuqi.distribution.CMRF method) (cuqi.distribution.Distribution method) (cuqi.distribution.DistributionGallery method) (cuqi.distribution.Gamma method) (cuqi.distribution.Gaussian method) (cuqi.distribution.GMRF method) (cuqi.distribution.InverseGamma method) (cuqi.distribution.JointDistribution method) (cuqi.distribution.JointGaussianSqrtPrec method) (cuqi.distribution.Laplace method) (cuqi.distribution.LMRF method) (cuqi.distribution.Lognormal method) (cuqi.distribution.ModifiedHalfNormal method) (cuqi.distribution.MultipleLikelihoodPosterior method) (cuqi.distribution.Normal method) (cuqi.distribution.Posterior method) (cuqi.distribution.SmoothedLaplace method) (cuqi.distribution.TruncatedNormal method) (cuqi.distribution.Uniform method) (cuqi.distribution.UserDefinedDistribution method) (cuqi.implicitprior.ConstrainedGaussian method) (cuqi.implicitprior.ConstrainedGMRF method) (cuqi.implicitprior.MoreauYoshidaPrior method) (cuqi.implicitprior.NonnegativeGaussian method) (cuqi.implicitprior.NonnegativeGMRF method) (cuqi.implicitprior.RegularizedGaussian method) (cuqi.implicitprior.RegularizedGMRF method) (cuqi.implicitprior.RegularizedUnboundedUniform method) (cuqi.implicitprior.RestorationPrior method) (cuqi.likelihood.Likelihood method) (cuqi.likelihood.UserDefinedLikelihood method) get_samples() (cuqi.experimental.mcmc.Conjugate method) (cuqi.experimental.mcmc.ConjugateApprox method) (cuqi.experimental.mcmc.CWMH method) (cuqi.experimental.mcmc.Direct method) (cuqi.experimental.mcmc.HybridGibbs method) (cuqi.experimental.mcmc.LinearRTO method) (cuqi.experimental.mcmc.MALA method) (cuqi.experimental.mcmc.MH method) (cuqi.experimental.mcmc.MYULA method) (cuqi.experimental.mcmc.NUTS method) (cuqi.experimental.mcmc.PCN method) (cuqi.experimental.mcmc.PnPULA method) (cuqi.experimental.mcmc.ProposalBasedSampler method) (cuqi.experimental.mcmc.RegularizedLinearRTO method) (cuqi.experimental.mcmc.Sampler method) (cuqi.experimental.mcmc.UGLA method) (cuqi.experimental.mcmc.ULA method) get_state() (cuqi.experimental.mcmc.Conjugate method) (cuqi.experimental.mcmc.ConjugateApprox method) (cuqi.experimental.mcmc.CWMH method) (cuqi.experimental.mcmc.Direct method) (cuqi.experimental.mcmc.LinearRTO method) (cuqi.experimental.mcmc.MALA method) (cuqi.experimental.mcmc.MH method) (cuqi.experimental.mcmc.MYULA method) (cuqi.experimental.mcmc.NUTS method) (cuqi.experimental.mcmc.PCN method) (cuqi.experimental.mcmc.PnPULA method) (cuqi.experimental.mcmc.ProposalBasedSampler method) (cuqi.experimental.mcmc.RegularizedLinearRTO method) (cuqi.experimental.mcmc.Sampler method) (cuqi.experimental.mcmc.UGLA method) (cuqi.experimental.mcmc.ULA method) get_writeable_attributes() (in module cuqi.utilities) get_writeable_properties() (in module cuqi.utilities) getfield() (cuqi.array.CUQIarray method) getSetAttributes() (cuqi.utilities.ProblemInfo method) Geweke() (in module cuqi.diagnostics) Gibbs (class in cuqi.sampler) GMRF (class in cuqi.distribution) gradient() (cuqi.density.Density method) (cuqi.density.EvaluatedDensity method) (cuqi.distribution.Beta method) (cuqi.distribution.Cauchy method) (cuqi.distribution.CMRF method) (cuqi.distribution.Distribution method) (cuqi.distribution.DistributionGallery method) (cuqi.distribution.Gamma method) (cuqi.distribution.Gaussian method) (cuqi.distribution.GMRF method) (cuqi.distribution.InverseGamma method) (cuqi.distribution.JointGaussianSqrtPrec method) (cuqi.distribution.Laplace method) (cuqi.distribution.LMRF method) (cuqi.distribution.Lognormal method) (cuqi.distribution.ModifiedHalfNormal method) (cuqi.distribution.MultipleLikelihoodPosterior method) (cuqi.distribution.Normal method) (cuqi.distribution.Posterior method) (cuqi.distribution.SmoothedLaplace method) (cuqi.distribution.TruncatedNormal method) (cuqi.distribution.Uniform method) (cuqi.distribution.UserDefinedDistribution method) (cuqi.implicitprior.ConstrainedGaussian method) (cuqi.implicitprior.ConstrainedGMRF method) (cuqi.implicitprior.MoreauYoshidaPrior method) (cuqi.implicitprior.NonnegativeGaussian method) (cuqi.implicitprior.NonnegativeGMRF method) (cuqi.implicitprior.RegularizedGaussian method) (cuqi.implicitprior.RegularizedGMRF method) (cuqi.implicitprior.RegularizedUnboundedUniform method) (cuqi.implicitprior.RestorationPrior method) (cuqi.likelihood.Likelihood method) (cuqi.likelihood.UserDefinedLikelihood method) (cuqi.model.AffineModel method) (cuqi.model.LinearModel method) (cuqi.model.Model method) (cuqi.model.PDEModel method) grains() (in module cuqi.data) grid (cuqi.geometry.Continuous property) (cuqi.geometry.Continuous1D attribute) (cuqi.geometry.Continuous1D property) (cuqi.geometry.Continuous2D property) (cuqi.geometry.CustomKL property) (cuqi.geometry.KLExpansion property) (cuqi.geometry.KLExpansion_Full property) (cuqi.geometry.MappedGeometry property) (cuqi.geometry.StepExpansion property) grid_obs (cuqi.pde.LinearPDE property) (cuqi.pde.PDE property) (cuqi.pde.SteadyStateLinearPDE property) (cuqi.pde.TimeDependentLinearPDE property) grid_sol (cuqi.pde.LinearPDE property) (cuqi.pde.PDE property) (cuqi.pde.SteadyStateLinearPDE property) (cuqi.pde.TimeDependentLinearPDE property) grids_equal (cuqi.pde.LinearPDE property) (cuqi.pde.PDE property) (cuqi.pde.SteadyStateLinearPDE property) (cuqi.pde.TimeDependentLinearPDE property)

H

Heat1D (class in cuqi.testproblem) high (cuqi.distribution.TruncatedNormal property)

hist_chain() (cuqi.samples.Samples method) HybridGibbs (class in cuqi.experimental.mcmc)

I

imag (cuqi.array.CUQIarray attribute) Image2D (class in cuqi.geometry) imresize() (in module cuqi.data) infer_len() (in module cuqi.utilities) infoString (cuqi.utilities.ProblemInfo attribute) initialize() (cuqi.experimental.mcmc.Conjugate method) (cuqi.experimental.mcmc.ConjugateApprox method) (cuqi.experimental.mcmc.CWMH method) (cuqi.experimental.mcmc.Direct method) (cuqi.experimental.mcmc.LinearRTO method) (cuqi.experimental.mcmc.MALA method) (cuqi.experimental.mcmc.MH method) (cuqi.experimental.mcmc.MYULA method) (cuqi.experimental.mcmc.NUTS method) (cuqi.experimental.mcmc.PCN method) (cuqi.experimental.mcmc.PnPULA method) (cuqi.experimental.mcmc.ProposalBasedSampler method) (cuqi.experimental.mcmc.RegularizedLinearRTO method) (cuqi.experimental.mcmc.Sampler method) (cuqi.experimental.mcmc.UGLA method) (cuqi.experimental.mcmc.ULA method) InverseGamma (class in cuqi.distribution) is_cond (cuqi.distribution.Beta property) (cuqi.distribution.Cauchy property) (cuqi.distribution.CMRF property) (cuqi.distribution.Distribution property) (cuqi.distribution.DistributionGallery property) (cuqi.distribution.Gamma property) (cuqi.distribution.Gaussian property) (cuqi.distribution.GMRF property) (cuqi.distribution.InverseGamma property) (cuqi.distribution.JointGaussianSqrtPrec property) (cuqi.distribution.Laplace property) (cuqi.distribution.LMRF property) (cuqi.distribution.Lognormal property) (cuqi.distribution.ModifiedHalfNormal property) (cuqi.distribution.MultipleLikelihoodPosterior property) (cuqi.distribution.Normal property) (cuqi.distribution.Posterior property) (cuqi.distribution.SmoothedLaplace property) (cuqi.distribution.TruncatedNormal property) (cuqi.distribution.Uniform property) (cuqi.distribution.UserDefinedDistribution property) (cuqi.implicitprior.ConstrainedGaussian property) (cuqi.implicitprior.ConstrainedGMRF property) (cuqi.implicitprior.MoreauYoshidaPrior property) (cuqi.implicitprior.NonnegativeGaussian property) (cuqi.implicitprior.NonnegativeGMRF property) (cuqi.implicitprior.RegularizedGaussian property) (cuqi.implicitprior.RegularizedGMRF property) (cuqi.implicitprior.RegularizedUnboundedUniform property) (cuqi.implicitprior.RestorationPrior property)

is_vec (cuqi.samples.Samples property) item() (cuqi.array.CUQIarray method) items() (cuqi.samples.JointSamples method) itemset() (cuqi.array.CUQIarray method) itemsize (cuqi.array.CUQIarray attribute)

J

JointDistribution (class in cuqi.distribution)

JointGaussianSqrtPrec (class in cuqi.distribution) JointSamples (class in cuqi.samples)

K

keys() (cuqi.samples.JointSamples method)

KLExpansion (class in cuqi.geometry) KLExpansion_Full (class in cuqi.geometry)

L

L_BFGS_B (class in cuqi.solver) Laplace (class in cuqi.distribution) Likelihood (class in cuqi.likelihood) likelihood (cuqi.experimental.mcmc.LinearRTO property) (cuqi.experimental.mcmc.PCN property) (cuqi.experimental.mcmc.RegularizedLinearRTO property) (cuqi.experimental.mcmc.UGLA property) (cuqi.problem.BayesianProblem property) (cuqi.sampler.LinearRTO property) (cuqi.sampler.pCN property) (cuqi.sampler.RegularizedLinearRTO property) (cuqi.testproblem.Abel1D attribute) (cuqi.testproblem.Abel1D property) (cuqi.testproblem.Deconvolution1D property) (cuqi.testproblem.Deconvolution2D attribute) (cuqi.testproblem.Deconvolution2D property) (cuqi.testproblem.Heat1D attribute) (cuqi.testproblem.Heat1D property) (cuqi.testproblem.Poisson1D attribute) (cuqi.testproblem.Poisson1D property) (cuqi.testproblem.WangCubic property) likelihoods (cuqi.distribution.MultipleLikelihoodPosterior property) (cuqi.experimental.mcmc.LinearRTO property) (cuqi.experimental.mcmc.RegularizedLinearRTO property) (cuqi.sampler.LinearRTO property) (cuqi.sampler.RegularizedLinearRTO property) LinearModel (class in cuqi.model) LinearPDE (class in cuqi.pde) LinearRTO (class in cuqi.experimental.mcmc) (class in cuqi.sampler) LM (class in cuqi.solver) LMRF (class in cuqi.distribution) load_checkpoint() (cuqi.experimental.mcmc.Conjugate method) (cuqi.experimental.mcmc.ConjugateApprox method) (cuqi.experimental.mcmc.CWMH method) (cuqi.experimental.mcmc.Direct method) (cuqi.experimental.mcmc.LinearRTO method) (cuqi.experimental.mcmc.MALA method) (cuqi.experimental.mcmc.MH method) (cuqi.experimental.mcmc.MYULA method) (cuqi.experimental.mcmc.NUTS method) (cuqi.experimental.mcmc.PCN method) (cuqi.experimental.mcmc.PnPULA method) (cuqi.experimental.mcmc.ProposalBasedSampler method) (cuqi.experimental.mcmc.RegularizedLinearRTO method) (cuqi.experimental.mcmc.Sampler method) (cuqi.experimental.mcmc.UGLA method) (cuqi.experimental.mcmc.ULA method) location (cuqi.distribution.Cauchy property) (cuqi.distribution.CMRF property) (cuqi.distribution.LMRF property) (cuqi.distribution.SmoothedLaplace property) log_proposal() (cuqi.sampler.MALA method) logd() (cuqi.density.Density method) (cuqi.density.EvaluatedDensity method) (cuqi.distribution.Beta method) (cuqi.distribution.Cauchy method) (cuqi.distribution.CMRF method) (cuqi.distribution.Distribution method) (cuqi.distribution.DistributionGallery method) (cuqi.distribution.Gamma method) (cuqi.distribution.Gaussian method) (cuqi.distribution.GMRF method) (cuqi.distribution.InverseGamma method) (cuqi.distribution.JointDistribution method) (cuqi.distribution.JointGaussianSqrtPrec method) (cuqi.distribution.Laplace method) (cuqi.distribution.LMRF method) (cuqi.distribution.Lognormal method) (cuqi.distribution.ModifiedHalfNormal method) (cuqi.distribution.MultipleLikelihoodPosterior method) (cuqi.distribution.Normal method) (cuqi.distribution.Posterior method) (cuqi.distribution.SmoothedLaplace method) (cuqi.distribution.TruncatedNormal method) (cuqi.distribution.Uniform method) (cuqi.distribution.UserDefinedDistribution method) (cuqi.implicitprior.ConstrainedGaussian method) (cuqi.implicitprior.ConstrainedGMRF method) (cuqi.implicitprior.MoreauYoshidaPrior method) (cuqi.implicitprior.NonnegativeGaussian method) (cuqi.implicitprior.NonnegativeGMRF method) (cuqi.implicitprior.RegularizedGaussian method) (cuqi.implicitprior.RegularizedGMRF method) (cuqi.implicitprior.RegularizedUnboundedUniform method) (cuqi.implicitprior.RestorationPrior method) (cuqi.likelihood.Likelihood method) (cuqi.likelihood.UserDefinedLikelihood method)

logdet (cuqi.distribution.Gaussian property) Lognormal (class in cuqi.distribution) logpdf() (cuqi.distribution.Beta method) (cuqi.distribution.Cauchy method) (cuqi.distribution.CMRF method) (cuqi.distribution.Distribution method) (cuqi.distribution.DistributionGallery method) (cuqi.distribution.Gamma method) (cuqi.distribution.Gaussian method) (cuqi.distribution.GMRF method) (cuqi.distribution.InverseGamma method) (cuqi.distribution.JointGaussianSqrtPrec method) (cuqi.distribution.Laplace method) (cuqi.distribution.LMRF method) (cuqi.distribution.Lognormal method) (cuqi.distribution.ModifiedHalfNormal method) (cuqi.distribution.MultipleLikelihoodPosterior method) (cuqi.distribution.Normal method) (cuqi.distribution.Posterior method) (cuqi.distribution.SmoothedLaplace method) (cuqi.distribution.TruncatedNormal method) (cuqi.distribution.Uniform method) (cuqi.distribution.UserDefinedDistribution method) (cuqi.implicitprior.ConstrainedGaussian method) (cuqi.implicitprior.ConstrainedGMRF method) (cuqi.implicitprior.MoreauYoshidaPrior method) (cuqi.implicitprior.NonnegativeGaussian method) (cuqi.implicitprior.NonnegativeGMRF method) (cuqi.implicitprior.RegularizedGaussian method) (cuqi.implicitprior.RegularizedGMRF method) (cuqi.implicitprior.RegularizedUnboundedUniform method) (cuqi.implicitprior.RestorationPrior method) low (cuqi.distribution.TruncatedNormal property) LS (class in cuqi.solver)

M

MALA (class in cuqi.experimental.mcmc) (class in cuqi.sampler) MAP() (cuqi.problem.BayesianProblem method) (cuqi.testproblem.Abel1D method), [1] (cuqi.testproblem.Deconvolution1D method) (cuqi.testproblem.Deconvolution2D method), [1] (cuqi.testproblem.Heat1D method), [1] (cuqi.testproblem.Poisson1D method), [1] (cuqi.testproblem.WangCubic method) MappedGeometry (class in cuqi.geometry) max() (cuqi.array.CUQIarray method) max_depth (cuqi.experimental.mcmc.NUTS property) maximize (class in cuqi.solver) mean (cuqi.distribution.Gaussian property) (cuqi.distribution.GMRF property) (cuqi.distribution.Normal property) (cuqi.distribution.TruncatedNormal property) (cuqi.geometry.CustomKL property) (cuqi.implicitprior.ConstrainedGaussian property) (cuqi.implicitprior.ConstrainedGMRF property) (cuqi.implicitprior.NonnegativeGaussian property) (cuqi.implicitprior.NonnegativeGMRF property) (cuqi.implicitprior.RegularizedGaussian property) (cuqi.implicitprior.RegularizedGMRF property) (cuqi.implicitprior.RegularizedUnboundedUniform property) mean() (cuqi.array.CUQIarray method) (cuqi.samples.Samples method) median() (cuqi.samples.Samples method) mesh (cuqi.geometry.MappedGeometry property) method (cuqi.pde.TimeDependentLinearPDE property) MH (class in cuqi.experimental.mcmc) (class in cuqi.sampler) min() (cuqi.array.CUQIarray method) minimize (class in cuqi.solver) Miscellaneous (cuqi.utilities.ProblemInfo attribute) ML() (cuqi.problem.BayesianProblem method) (cuqi.testproblem.Abel1D method) (cuqi.testproblem.Deconvolution1D method) (cuqi.testproblem.Deconvolution2D method) (cuqi.testproblem.Heat1D method) (cuqi.testproblem.Poisson1D method) (cuqi.testproblem.WangCubic method) Model (class in cuqi.model) model (cuqi.distribution.Posterior property) (cuqi.experimental.mcmc.LinearRTO property) (cuqi.experimental.mcmc.RegularizedLinearRTO property) (cuqi.experimental.mcmc.UGLA property) (cuqi.likelihood.Likelihood property) (cuqi.likelihood.UserDefinedLikelihood property) (cuqi.problem.BayesianProblem property) (cuqi.sampler.LinearRTO property) (cuqi.sampler.RegularizedLinearRTO property) (cuqi.testproblem.Abel1D attribute) (cuqi.testproblem.Abel1D property) (cuqi.testproblem.Deconvolution1D property) (cuqi.testproblem.Deconvolution2D attribute) (cuqi.testproblem.Deconvolution2D property) (cuqi.testproblem.Heat1D attribute) (cuqi.testproblem.Heat1D property) (cuqi.testproblem.Poisson1D attribute) (cuqi.testproblem.Poisson1D property) (cuqi.testproblem.WangCubic property)

models (cuqi.distribution.MultipleLikelihoodPosterior property) (cuqi.experimental.mcmc.LinearRTO property) (cuqi.experimental.mcmc.RegularizedLinearRTO property) (cuqi.sampler.LinearRTO property) (cuqi.sampler.RegularizedLinearRTO property) ModifiedHalfNormal (class in cuqi.distribution) module cuqi cuqi.array cuqi.config cuqi.data cuqi.density cuqi.diagnostics cuqi.distribution cuqi.experimental cuqi.experimental.mcmc cuqi.geometry cuqi.implicitprior cuqi.likelihood cuqi.model cuqi.operator cuqi.pde cuqi.problem cuqi.sampler cuqi.samples cuqi.solver cuqi.testproblem cuqi.utilities MoreauYoshidaPrior (class in cuqi.implicitprior) MultipleLikelihoodPosterior (class in cuqi.distribution) MYULA (class in cuqi.experimental.mcmc)

N

n_steps (cuqi.geometry.StepExpansion property) name (cuqi.density.Density property) (cuqi.density.EvaluatedDensity property) (cuqi.distribution.Beta property) (cuqi.distribution.Cauchy property) (cuqi.distribution.CMRF property) (cuqi.distribution.Distribution property) (cuqi.distribution.DistributionGallery property) (cuqi.distribution.Gamma property) (cuqi.distribution.Gaussian property) (cuqi.distribution.GMRF property) (cuqi.distribution.InverseGamma property) (cuqi.distribution.JointGaussianSqrtPrec property) (cuqi.distribution.Laplace property) (cuqi.distribution.LMRF property) (cuqi.distribution.Lognormal property) (cuqi.distribution.ModifiedHalfNormal property) (cuqi.distribution.MultipleLikelihoodPosterior property) (cuqi.distribution.Normal property) (cuqi.distribution.Posterior property) (cuqi.distribution.SmoothedLaplace property) (cuqi.distribution.TruncatedNormal property) (cuqi.distribution.Uniform property) (cuqi.distribution.UserDefinedDistribution property) (cuqi.implicitprior.ConstrainedGaussian property) (cuqi.implicitprior.ConstrainedGMRF property) (cuqi.implicitprior.MoreauYoshidaPrior property) (cuqi.implicitprior.NonnegativeGaussian property) (cuqi.implicitprior.NonnegativeGMRF property) (cuqi.implicitprior.RegularizedGaussian property) (cuqi.implicitprior.RegularizedGMRF property) (cuqi.implicitprior.RegularizedUnboundedUniform property) (cuqi.implicitprior.RestorationPrior property) (cuqi.likelihood.Likelihood property) (cuqi.likelihood.UserDefinedLikelihood property)

nbytes (cuqi.array.CUQIarray attribute) ndim (cuqi.array.CUQIarray attribute) newbyteorder() (cuqi.array.CUQIarray method) NonnegativeGaussian (class in cuqi.implicitprior) NonnegativeGMRF (class in cuqi.implicitprior) nonzero() (cuqi.array.CUQIarray method) Normal (class in cuqi.distribution) normalizer (cuqi.geometry.KLExpansion property) Ns (cuqi.samples.Samples property) num_modes (cuqi.geometry.KLExpansion property) num_nodes (cuqi.operator.FirstOrderFiniteDifference property) (cuqi.operator.PrecisionFiniteDifference property) (cuqi.operator.SecondOrderFiniteDifference property) NUTS (class in cuqi.experimental.mcmc) (class in cuqi.sampler)

O

observe() (cuqi.pde.LinearPDE method) (cuqi.pde.PDE method) (cuqi.pde.SteadyStateLinearPDE method) (cuqi.pde.TimeDependentLinearPDE method)

Operator (class in cuqi.operator) opt_acc_rate (cuqi.experimental.mcmc.NUTS property) OWNDATA (in module cuqi.array)

P

p_power() (in module cuqi.data) par2fun() (cuqi.geometry.Continuous method) (cuqi.geometry.Continuous1D method) (cuqi.geometry.Continuous2D method) (cuqi.geometry.CustomKL method) (cuqi.geometry.Discrete method) (cuqi.geometry.Geometry method) (cuqi.geometry.Image2D method) (cuqi.geometry.KLExpansion method) (cuqi.geometry.KLExpansion_Full method) (cuqi.geometry.MappedGeometry method) (cuqi.geometry.StepExpansion method) par_dim (cuqi.geometry.Continuous property) (cuqi.geometry.Continuous1D property) (cuqi.geometry.Continuous2D property) (cuqi.geometry.CustomKL property) (cuqi.geometry.Discrete property) (cuqi.geometry.Geometry property) (cuqi.geometry.Image2D property) (cuqi.geometry.KLExpansion property) (cuqi.geometry.KLExpansion_Full property) (cuqi.geometry.MappedGeometry property) (cuqi.geometry.StepExpansion property) par_shape (cuqi.geometry.Continuous property) (cuqi.geometry.Continuous1D property) (cuqi.geometry.Continuous2D property) (cuqi.geometry.CustomKL property) (cuqi.geometry.Discrete property) (cuqi.geometry.Geometry property) (cuqi.geometry.Image2D property) (cuqi.geometry.KLExpansion property) (cuqi.geometry.KLExpansion_Full property) (cuqi.geometry.MappedGeometry property) (cuqi.geometry.StepExpansion property) (cuqi.likelihood.Likelihood property) parameters (cuqi.array.CUQIarray property) (cuqi.samples.Samples property) partition() (cuqi.array.CUQIarray method) PCN (class in cuqi.experimental.mcmc) pCN (class in cuqi.sampler) PDE (class in cuqi.pde) PDEModel (class in cuqi.model) pdf() (cuqi.distribution.Beta method) (cuqi.distribution.Cauchy method) (cuqi.distribution.CMRF method) (cuqi.distribution.Distribution method) (cuqi.distribution.DistributionGallery method) (cuqi.distribution.Gamma method) (cuqi.distribution.Gaussian method) (cuqi.distribution.GMRF method) (cuqi.distribution.InverseGamma method) (cuqi.distribution.JointGaussianSqrtPrec method) (cuqi.distribution.Laplace method) (cuqi.distribution.LMRF method) (cuqi.distribution.Lognormal method) (cuqi.distribution.ModifiedHalfNormal method) (cuqi.distribution.MultipleLikelihoodPosterior method) (cuqi.distribution.Normal method) (cuqi.distribution.Posterior method) (cuqi.distribution.SmoothedLaplace method) (cuqi.distribution.TruncatedNormal method) (cuqi.distribution.Uniform method) (cuqi.distribution.UserDefinedDistribution method) (cuqi.implicitprior.ConstrainedGaussian method) (cuqi.implicitprior.ConstrainedGMRF method) (cuqi.implicitprior.MoreauYoshidaPrior method) (cuqi.implicitprior.NonnegativeGaussian method) (cuqi.implicitprior.NonnegativeGMRF method) (cuqi.implicitprior.RegularizedGaussian method) (cuqi.implicitprior.RegularizedGMRF method) (cuqi.implicitprior.RegularizedUnboundedUniform method) (cuqi.implicitprior.RestorationPrior method) PDHG (class in cuqi.solver) physical_dim (cuqi.operator.FirstOrderFiniteDifference property) (cuqi.operator.PrecisionFiniteDifference property) (cuqi.operator.SecondOrderFiniteDifference property) plot() (cuqi.array.CUQIarray method) (cuqi.geometry.Continuous method) (cuqi.geometry.Continuous1D method) (cuqi.geometry.Continuous2D method) (cuqi.geometry.CustomKL method) (cuqi.geometry.Discrete method) (cuqi.geometry.Geometry method) (cuqi.geometry.Image2D method) (cuqi.geometry.KLExpansion method) (cuqi.geometry.KLExpansion_Full method) (cuqi.geometry.MappedGeometry method) (cuqi.geometry.StepExpansion method) (cuqi.samples.Samples method) plot_1D_density() (in module cuqi.utilities) plot_2D_density() (in module cuqi.utilities) plot_autocorrelation() (cuqi.samples.Samples method) plot_chain() (cuqi.samples.Samples method) plot_ci() (cuqi.samples.Samples method)

plot_ci_width() (cuqi.samples.Samples method) plot_contour() (cuqi.geometry.Continuous2D method) plot_contourf() (cuqi.geometry.Continuous2D method) plot_envelope() (cuqi.geometry.Continuous method) (cuqi.geometry.Continuous1D method) (cuqi.geometry.Continuous2D method) (cuqi.geometry.CustomKL method) (cuqi.geometry.Discrete method) (cuqi.geometry.Geometry method) (cuqi.geometry.Image2D method) (cuqi.geometry.KLExpansion method) (cuqi.geometry.KLExpansion_Full method) (cuqi.geometry.MappedGeometry method) (cuqi.geometry.StepExpansion method) plot_mean() (cuqi.samples.Samples method) plot_median() (cuqi.samples.Samples method) plot_pair() (cuqi.samples.Samples method) plot_pcolor() (cuqi.geometry.Continuous2D method) plot_std() (cuqi.samples.Samples method) plot_trace() (cuqi.samples.Samples method) plot_variance() (cuqi.samples.Samples method) plot_violin() (cuqi.samples.Samples method) PnPULA (class in cuqi.experimental.mcmc) Poisson1D (class in cuqi.testproblem) pop() (cuqi.samples.JointSamples method) popitem() (cuqi.samples.JointSamples method) Posterior (class in cuqi.distribution) posterior (cuqi.problem.BayesianProblem property) (cuqi.testproblem.Abel1D property) (cuqi.testproblem.Deconvolution1D property) (cuqi.testproblem.Deconvolution2D property) (cuqi.testproblem.Heat1D property) (cuqi.testproblem.Poisson1D property) (cuqi.testproblem.WangCubic property) prec (cuqi.distribution.Gaussian property) (cuqi.distribution.GMRF property) (cuqi.implicitprior.ConstrainedGaussian property) (cuqi.implicitprior.ConstrainedGMRF property) (cuqi.implicitprior.NonnegativeGaussian property) (cuqi.implicitprior.NonnegativeGMRF property) (cuqi.implicitprior.RegularizedGaussian property) (cuqi.implicitprior.RegularizedGMRF property) (cuqi.implicitprior.RegularizedUnboundedUniform property) PrecisionFiniteDifference (class in cuqi.operator) preset (cuqi.implicitprior.ConstrainedGaussian property) (cuqi.implicitprior.ConstrainedGMRF property) (cuqi.implicitprior.NonnegativeGaussian property) (cuqi.implicitprior.NonnegativeGMRF property) (cuqi.implicitprior.RegularizedGaussian property) (cuqi.implicitprior.RegularizedGMRF property) (cuqi.implicitprior.RegularizedUnboundedUniform property) prior (cuqi.distribution.MultipleLikelihoodPosterior property) (cuqi.experimental.mcmc.LinearRTO property) (cuqi.experimental.mcmc.PCN property) (cuqi.experimental.mcmc.RegularizedLinearRTO property) (cuqi.experimental.mcmc.UGLA property) (cuqi.implicitprior.MoreauYoshidaPrior property) (cuqi.problem.BayesianProblem property) (cuqi.sampler.LinearRTO property) (cuqi.sampler.pCN property) (cuqi.sampler.RegularizedLinearRTO property) (cuqi.testproblem.Abel1D attribute) (cuqi.testproblem.Abel1D property) (cuqi.testproblem.Deconvolution1D property) (cuqi.testproblem.Deconvolution2D attribute) (cuqi.testproblem.Deconvolution2D property) (cuqi.testproblem.Heat1D attribute) (cuqi.testproblem.Heat1D property) (cuqi.testproblem.Poisson1D attribute) (cuqi.testproblem.Poisson1D property) (cuqi.testproblem.WangCubic property) ProblemInfo (class in cuqi.utilities) prod() (cuqi.array.CUQIarray method) ProjectBox() (in module cuqi.solver) ProjectNonnegative() (in module cuqi.solver) proposal (cuqi.experimental.mcmc.CWMH property) (cuqi.experimental.mcmc.MH property) (cuqi.experimental.mcmc.ProposalBasedSampler property) (cuqi.sampler.CWMH property) (cuqi.sampler.MH property) (cuqi.sampler.ProposalBasedSampler property) ProposalBasedSampler (class in cuqi.experimental.mcmc) (class in cuqi.sampler) proximal (cuqi.experimental.mcmc.RegularizedLinearRTO property) (cuqi.implicitprior.ConstrainedGaussian property) (cuqi.implicitprior.ConstrainedGMRF property) (cuqi.implicitprior.NonnegativeGaussian property) (cuqi.implicitprior.NonnegativeGMRF property) (cuqi.implicitprior.RegularizedGaussian property) (cuqi.implicitprior.RegularizedGMRF property) (cuqi.implicitprior.RegularizedUnboundedUniform property) ProximalL1() (in module cuqi.solver) ptp() (cuqi.array.CUQIarray method) put() (cuqi.array.CUQIarray method)

R

range_dim (cuqi.model.AffineModel property) (cuqi.model.LinearModel property) (cuqi.model.Model property) (cuqi.model.PDEModel property) rank (cuqi.distribution.Gaussian property) rate (cuqi.distribution.Gamma property) ravel() (cuqi.array.CUQIarray method) real (cuqi.array.CUQIarray attribute) regularization_options() (cuqi.implicitprior.ConstrainedGaussian static method) (cuqi.implicitprior.ConstrainedGMRF static method) (cuqi.implicitprior.NonnegativeGaussian static method) (cuqi.implicitprior.NonnegativeGMRF static method) (cuqi.implicitprior.RegularizedGaussian static method) (cuqi.implicitprior.RegularizedGMRF static method) (cuqi.implicitprior.RegularizedUnboundedUniform static method) RegularizedGaussian (class in cuqi.implicitprior) RegularizedGMRF (class in cuqi.implicitprior) RegularizedLinearRTO (class in cuqi.experimental.mcmc) (class in cuqi.sampler) RegularizedUnboundedUniform (class in cuqi.implicitprior) reinitialize() (cuqi.experimental.mcmc.Conjugate method) (cuqi.experimental.mcmc.ConjugateApprox method) (cuqi.experimental.mcmc.CWMH method) (cuqi.experimental.mcmc.Direct method) (cuqi.experimental.mcmc.LinearRTO method) (cuqi.experimental.mcmc.MALA method) (cuqi.experimental.mcmc.MH method) (cuqi.experimental.mcmc.MYULA method) (cuqi.experimental.mcmc.NUTS method) (cuqi.experimental.mcmc.PCN method) (cuqi.experimental.mcmc.PnPULA method) (cuqi.experimental.mcmc.ProposalBasedSampler method) (cuqi.experimental.mcmc.RegularizedLinearRTO method) (cuqi.experimental.mcmc.Sampler method) (cuqi.experimental.mcmc.UGLA method) (cuqi.experimental.mcmc.ULA method)

repeat() (cuqi.array.CUQIarray method) reshape() (cuqi.array.CUQIarray method) resize() (cuqi.array.CUQIarray method) RestorationPrior (class in cuqi.implicitprior) restore() (cuqi.implicitprior.RestorationPrior method) rgb2gray() (in module cuqi.data) round() (cuqi.array.CUQIarray method)

S

sample() (cuqi.distribution.Beta method) (cuqi.distribution.Cauchy method) (cuqi.distribution.CMRF method) (cuqi.distribution.Distribution method) (cuqi.distribution.DistributionGallery method) (cuqi.distribution.Gamma method) (cuqi.distribution.Gaussian method) (cuqi.distribution.GMRF method) (cuqi.distribution.InverseGamma method) (cuqi.distribution.JointGaussianSqrtPrec method) (cuqi.distribution.Laplace method) (cuqi.distribution.LMRF method) (cuqi.distribution.Lognormal method) (cuqi.distribution.ModifiedHalfNormal method) (cuqi.distribution.MultipleLikelihoodPosterior method) (cuqi.distribution.Normal method) (cuqi.distribution.Posterior method) (cuqi.distribution.SmoothedLaplace method) (cuqi.distribution.TruncatedNormal method) (cuqi.distribution.Uniform method) (cuqi.distribution.UserDefinedDistribution method) (cuqi.experimental.mcmc.Conjugate method) (cuqi.experimental.mcmc.ConjugateApprox method) (cuqi.experimental.mcmc.CWMH method) (cuqi.experimental.mcmc.Direct method) (cuqi.experimental.mcmc.HybridGibbs method) (cuqi.experimental.mcmc.LinearRTO method) (cuqi.experimental.mcmc.MALA method) (cuqi.experimental.mcmc.MH method) (cuqi.experimental.mcmc.MYULA method) (cuqi.experimental.mcmc.NUTS method) (cuqi.experimental.mcmc.PCN method) (cuqi.experimental.mcmc.PnPULA method) (cuqi.experimental.mcmc.ProposalBasedSampler method) (cuqi.experimental.mcmc.RegularizedLinearRTO method) (cuqi.experimental.mcmc.Sampler method) (cuqi.experimental.mcmc.UGLA method) (cuqi.experimental.mcmc.ULA method) (cuqi.implicitprior.ConstrainedGaussian method) (cuqi.implicitprior.ConstrainedGMRF method) (cuqi.implicitprior.MoreauYoshidaPrior method) (cuqi.implicitprior.NonnegativeGaussian method) (cuqi.implicitprior.NonnegativeGMRF method) (cuqi.implicitprior.RegularizedGaussian method) (cuqi.implicitprior.RegularizedGMRF method) (cuqi.implicitprior.RegularizedUnboundedUniform method) (cuqi.implicitprior.RestorationPrior method) (cuqi.sampler.CWMH method) (cuqi.sampler.Gibbs method) (cuqi.sampler.LinearRTO method) (cuqi.sampler.MALA method) (cuqi.sampler.MH method) (cuqi.sampler.NUTS method) (cuqi.sampler.pCN method) (cuqi.sampler.ProposalBasedSampler method) (cuqi.sampler.RegularizedLinearRTO method) (cuqi.sampler.Sampler method) (cuqi.sampler.UGLA method) (cuqi.sampler.ULA method) sample_adapt() (cuqi.sampler.CWMH method) (cuqi.sampler.LinearRTO method) (cuqi.sampler.MALA method) (cuqi.sampler.MH method) (cuqi.sampler.NUTS method) (cuqi.sampler.pCN method) (cuqi.sampler.ProposalBasedSampler method) (cuqi.sampler.RegularizedLinearRTO method) (cuqi.sampler.Sampler method) (cuqi.sampler.UGLA method) (cuqi.sampler.ULA method) sample_posterior() (cuqi.problem.BayesianProblem method) (cuqi.testproblem.Abel1D method), [1] (cuqi.testproblem.Deconvolution1D method) (cuqi.testproblem.Deconvolution2D method), [1] (cuqi.testproblem.Heat1D method), [1] (cuqi.testproblem.Poisson1D method), [1] (cuqi.testproblem.WangCubic method) sample_prior() (cuqi.problem.BayesianProblem method) (cuqi.testproblem.Abel1D method) (cuqi.testproblem.Deconvolution1D method) (cuqi.testproblem.Deconvolution2D method) (cuqi.testproblem.Heat1D method) (cuqi.testproblem.Poisson1D method) (cuqi.testproblem.WangCubic method) Sampler (class in cuqi.experimental.mcmc) (class in cuqi.sampler) Samples (class in cuqi.samples) satellite() (in module cuqi.data) save_checkpoint() (cuqi.experimental.mcmc.Conjugate method) (cuqi.experimental.mcmc.ConjugateApprox method) (cuqi.experimental.mcmc.CWMH method) (cuqi.experimental.mcmc.Direct method) (cuqi.experimental.mcmc.LinearRTO method) (cuqi.experimental.mcmc.MALA method) (cuqi.experimental.mcmc.MH method) (cuqi.experimental.mcmc.MYULA method) (cuqi.experimental.mcmc.NUTS method) (cuqi.experimental.mcmc.PCN method) (cuqi.experimental.mcmc.PnPULA method) (cuqi.experimental.mcmc.ProposalBasedSampler method) (cuqi.experimental.mcmc.RegularizedLinearRTO method) (cuqi.experimental.mcmc.Sampler method) (cuqi.experimental.mcmc.UGLA method) (cuqi.experimental.mcmc.ULA method) scale (cuqi.distribution.Cauchy property) (cuqi.distribution.Gamma property) (cuqi.distribution.SmoothedLaplace property) (cuqi.experimental.mcmc.CWMH property) searchsorted() (cuqi.array.CUQIarray method) SecondOrderFiniteDifference (class in cuqi.operator) set_data() (cuqi.problem.BayesianProblem method) (cuqi.testproblem.Abel1D method) (cuqi.testproblem.Deconvolution1D method) (cuqi.testproblem.Deconvolution2D method) (cuqi.testproblem.Heat1D method) (cuqi.testproblem.Poisson1D method) (cuqi.testproblem.WangCubic method) set_history() (cuqi.experimental.mcmc.Conjugate method) (cuqi.experimental.mcmc.ConjugateApprox method) (cuqi.experimental.mcmc.CWMH method) (cuqi.experimental.mcmc.Direct method) (cuqi.experimental.mcmc.LinearRTO method) (cuqi.experimental.mcmc.MALA method) (cuqi.experimental.mcmc.MH method) (cuqi.experimental.mcmc.MYULA method) (cuqi.experimental.mcmc.NUTS method) (cuqi.experimental.mcmc.PCN method) (cuqi.experimental.mcmc.PnPULA method) (cuqi.experimental.mcmc.ProposalBasedSampler method) (cuqi.experimental.mcmc.RegularizedLinearRTO method) (cuqi.experimental.mcmc.Sampler method) (cuqi.experimental.mcmc.UGLA method) (cuqi.experimental.mcmc.ULA method) set_state() (cuqi.experimental.mcmc.Conjugate method) (cuqi.experimental.mcmc.ConjugateApprox method) (cuqi.experimental.mcmc.CWMH method) (cuqi.experimental.mcmc.Direct method) (cuqi.experimental.mcmc.LinearRTO method) (cuqi.experimental.mcmc.MALA method) (cuqi.experimental.mcmc.MH method) (cuqi.experimental.mcmc.MYULA method) (cuqi.experimental.mcmc.NUTS method) (cuqi.experimental.mcmc.PCN method) (cuqi.experimental.mcmc.PnPULA method) (cuqi.experimental.mcmc.ProposalBasedSampler method) (cuqi.experimental.mcmc.RegularizedLinearRTO method) (cuqi.experimental.mcmc.Sampler method) (cuqi.experimental.mcmc.UGLA method) (cuqi.experimental.mcmc.ULA method)

setdefault() (cuqi.samples.JointSamples method) setfield() (cuqi.array.CUQIarray method) setflags() (cuqi.array.CUQIarray method) shape (cuqi.array.CUQIarray attribute) (cuqi.distribution.Gamma property) (cuqi.distribution.ModifiedHalfNormal property) (cuqi.operator.FirstOrderFiniteDifference property) (cuqi.operator.Operator property) (cuqi.operator.PrecisionFiniteDifference property) (cuqi.operator.SecondOrderFiniteDifference property) (cuqi.samples.Samples property) shepp_logan() (in module cuqi.data) shift (cuqi.model.AffineModel property) (cuqi.model.LinearModel property) single_update() (cuqi.sampler.CWMH method) (cuqi.sampler.MALA method) (cuqi.sampler.MH method) (cuqi.sampler.pCN method) (cuqi.sampler.ULA method) size (cuqi.array.CUQIarray attribute) SmoothedLaplace (class in cuqi.distribution) smoothing_strength (cuqi.implicitprior.MoreauYoshidaPrior property) solve() (cuqi.pde.LinearPDE method) (cuqi.pde.PDE method) (cuqi.pde.SteadyStateLinearPDE method) (cuqi.pde.TimeDependentLinearPDE method) (cuqi.solver.ADMM method) (cuqi.solver.CGLS method) (cuqi.solver.FISTA method) (cuqi.solver.L_BFGS_B method) (cuqi.solver.LM method) (cuqi.solver.LS method) (cuqi.solver.maximize method) (cuqi.solver.minimize method) sort() (cuqi.array.CUQIarray method) sparse_cholesky() (in module cuqi.utilities) spectrum() (in module cuqi.diagnostics) spectrum0() (in module cuqi.diagnostics) sqrtcov (cuqi.distribution.Gaussian property) (cuqi.implicitprior.ConstrainedGaussian property) (cuqi.implicitprior.ConstrainedGMRF property) (cuqi.implicitprior.NonnegativeGaussian property) (cuqi.implicitprior.NonnegativeGMRF property) (cuqi.implicitprior.RegularizedGaussian property) (cuqi.implicitprior.RegularizedGMRF property) (cuqi.implicitprior.RegularizedUnboundedUniform property) sqrtprec (cuqi.distribution.Gaussian property) (cuqi.distribution.GMRF property) (cuqi.distribution.JointGaussianSqrtPrec property) (cuqi.implicitprior.ConstrainedGaussian property) (cuqi.implicitprior.ConstrainedGMRF property) (cuqi.implicitprior.NonnegativeGaussian property) (cuqi.implicitprior.NonnegativeGMRF property) (cuqi.implicitprior.RegularizedGaussian property) (cuqi.implicitprior.RegularizedGMRF property) (cuqi.implicitprior.RegularizedUnboundedUniform property) sqrtprecTimesMean (cuqi.distribution.Gaussian property) (cuqi.distribution.GMRF property) (cuqi.distribution.JointGaussianSqrtPrec property) squeeze() (cuqi.array.CUQIarray method) std (cuqi.distribution.Normal property) (cuqi.distribution.TruncatedNormal property) (cuqi.geometry.CustomKL property) std() (cuqi.array.CUQIarray method) (cuqi.samples.Samples method) SteadyStateLinearPDE (class in cuqi.pde) step() (cuqi.experimental.mcmc.Conjugate method) (cuqi.experimental.mcmc.ConjugateApprox method) (cuqi.experimental.mcmc.CWMH method) (cuqi.experimental.mcmc.Direct method) (cuqi.experimental.mcmc.HybridGibbs method) (cuqi.experimental.mcmc.LinearRTO method) (cuqi.experimental.mcmc.MALA method) (cuqi.experimental.mcmc.MH method) (cuqi.experimental.mcmc.MYULA method) (cuqi.experimental.mcmc.NUTS method) (cuqi.experimental.mcmc.PCN method) (cuqi.experimental.mcmc.PnPULA method) (cuqi.experimental.mcmc.ProposalBasedSampler method) (cuqi.experimental.mcmc.RegularizedLinearRTO method) (cuqi.experimental.mcmc.Sampler method) (cuqi.experimental.mcmc.UGLA method) (cuqi.experimental.mcmc.ULA method) (cuqi.sampler.Conjugate method) (cuqi.sampler.ConjugateApprox method) (cuqi.sampler.CWMH method) (cuqi.sampler.Gibbs method) (cuqi.sampler.LinearRTO method) (cuqi.sampler.MALA method) (cuqi.sampler.MH method) (cuqi.sampler.NUTS method) (cuqi.sampler.pCN method) (cuqi.sampler.ProposalBasedSampler method) (cuqi.sampler.RegularizedLinearRTO method) (cuqi.sampler.Sampler method) (cuqi.sampler.UGLA method) (cuqi.sampler.ULA method) step_size (cuqi.experimental.mcmc.NUTS property) step_tune() (cuqi.sampler.CWMH method) (cuqi.sampler.Gibbs method) (cuqi.sampler.LinearRTO method) (cuqi.sampler.MALA method) (cuqi.sampler.MH method) (cuqi.sampler.NUTS method) (cuqi.sampler.pCN method) (cuqi.sampler.ProposalBasedSampler method) (cuqi.sampler.RegularizedLinearRTO method) (cuqi.sampler.Sampler method) (cuqi.sampler.UGLA method) (cuqi.sampler.ULA method) StepExpansion (class in cuqi.geometry) strength (cuqi.implicitprior.ConstrainedGaussian property) (cuqi.implicitprior.ConstrainedGMRF property) (cuqi.implicitprior.NonnegativeGaussian property) (cuqi.implicitprior.NonnegativeGMRF property) (cuqi.implicitprior.RegularizedGaussian property) (cuqi.implicitprior.RegularizedGMRF property) (cuqi.implicitprior.RegularizedUnboundedUniform property) strides (cuqi.array.CUQIarray attribute) sum() (cuqi.array.CUQIarray method) swapaxes() (cuqi.array.CUQIarray method)

T

T (cuqi.array.CUQIarray attribute) (cuqi.model.LinearModel property) (cuqi.operator.FirstOrderFiniteDifference property) (cuqi.operator.Operator property) (cuqi.operator.PrecisionFiniteDifference property) (cuqi.operator.SecondOrderFiniteDifference property) take() (cuqi.array.CUQIarray method) target (cuqi.experimental.mcmc.Conjugate property) (cuqi.experimental.mcmc.ConjugateApprox property) (cuqi.experimental.mcmc.CWMH property) (cuqi.experimental.mcmc.Direct property) (cuqi.experimental.mcmc.LinearRTO property) (cuqi.experimental.mcmc.MALA property) (cuqi.experimental.mcmc.MH property) (cuqi.experimental.mcmc.MYULA property) (cuqi.experimental.mcmc.NUTS property) (cuqi.experimental.mcmc.PCN property) (cuqi.experimental.mcmc.PnPULA property) (cuqi.experimental.mcmc.ProposalBasedSampler property) (cuqi.experimental.mcmc.RegularizedLinearRTO property) (cuqi.experimental.mcmc.Sampler property) (cuqi.experimental.mcmc.UGLA property) (cuqi.experimental.mcmc.ULA property) (cuqi.sampler.CWMH property) (cuqi.sampler.LinearRTO property) (cuqi.sampler.MALA property) (cuqi.sampler.MH property) (cuqi.sampler.NUTS property) (cuqi.sampler.pCN property) (cuqi.sampler.ProposalBasedSampler property) (cuqi.sampler.RegularizedLinearRTO property) (cuqi.sampler.Sampler property) (cuqi.sampler.UGLA property) (cuqi.sampler.ULA property) threephases() (in module cuqi.data) TimeDependentLinearPDE (class in cuqi.pde) to_arviz_inferencedata() (cuqi.samples.Samples method) to_likelihood() (cuqi.distribution.Beta method) (cuqi.distribution.Cauchy method) (cuqi.distribution.CMRF method) (cuqi.distribution.Distribution method) (cuqi.distribution.DistributionGallery method) (cuqi.distribution.Gamma method) (cuqi.distribution.Gaussian method) (cuqi.distribution.GMRF method) (cuqi.distribution.InverseGamma method) (cuqi.distribution.JointGaussianSqrtPrec method) (cuqi.distribution.Laplace method) (cuqi.distribution.LMRF method) (cuqi.distribution.Lognormal method) (cuqi.distribution.ModifiedHalfNormal method) (cuqi.distribution.MultipleLikelihoodPosterior method) (cuqi.distribution.Normal method) (cuqi.distribution.Posterior method) (cuqi.distribution.SmoothedLaplace method) (cuqi.distribution.TruncatedNormal method) (cuqi.distribution.Uniform method) (cuqi.distribution.UserDefinedDistribution method) (cuqi.implicitprior.ConstrainedGaussian method) (cuqi.implicitprior.ConstrainedGMRF method) (cuqi.implicitprior.MoreauYoshidaPrior method) (cuqi.implicitprior.NonnegativeGaussian method) (cuqi.implicitprior.NonnegativeGMRF method) (cuqi.implicitprior.RegularizedGaussian method) (cuqi.implicitprior.RegularizedGMRF method) (cuqi.implicitprior.RegularizedUnboundedUniform method) (cuqi.implicitprior.RestorationPrior method)

to_numpy() (cuqi.array.CUQIarray method) tobytes() (cuqi.array.CUQIarray method) tofile() (cuqi.array.CUQIarray method) tolist() (cuqi.array.CUQIarray method) tostring() (cuqi.array.CUQIarray method) trace() (cuqi.array.CUQIarray method) transformation (cuqi.implicitprior.ConstrainedGaussian property) (cuqi.implicitprior.ConstrainedGMRF property) (cuqi.implicitprior.NonnegativeGaussian property) (cuqi.implicitprior.NonnegativeGMRF property) (cuqi.implicitprior.RegularizedGaussian property) (cuqi.implicitprior.RegularizedGMRF property) (cuqi.implicitprior.RegularizedUnboundedUniform property) transpose() (cuqi.array.CUQIarray method) trunc_term (cuqi.geometry.CustomKL property) TruncatedNormal (class in cuqi.distribution) tune() (cuqi.experimental.mcmc.Conjugate method) (cuqi.experimental.mcmc.ConjugateApprox method) (cuqi.experimental.mcmc.CWMH method) (cuqi.experimental.mcmc.Direct method) (cuqi.experimental.mcmc.HybridGibbs method) (cuqi.experimental.mcmc.LinearRTO method) (cuqi.experimental.mcmc.MALA method) (cuqi.experimental.mcmc.MH method) (cuqi.experimental.mcmc.MYULA method) (cuqi.experimental.mcmc.NUTS method) (cuqi.experimental.mcmc.PCN method) (cuqi.experimental.mcmc.PnPULA method) (cuqi.experimental.mcmc.ProposalBasedSampler method) (cuqi.experimental.mcmc.RegularizedLinearRTO method) (cuqi.experimental.mcmc.Sampler method) (cuqi.experimental.mcmc.UGLA method) (cuqi.experimental.mcmc.ULA method) (cuqi.sampler.CWMH method) (cuqi.sampler.LinearRTO method) (cuqi.sampler.MALA method) (cuqi.sampler.MH method) (cuqi.sampler.NUTS method) (cuqi.sampler.pCN method) (cuqi.sampler.ProposalBasedSampler method) (cuqi.sampler.RegularizedLinearRTO method) (cuqi.sampler.Sampler method) (cuqi.sampler.UGLA method) (cuqi.sampler.ULA method)

U

UGLA (class in cuqi.experimental.mcmc) (class in cuqi.sampler) ULA (class in cuqi.experimental.mcmc) (class in cuqi.sampler) Uniform (class in cuqi.distribution) update() (cuqi.samples.JointSamples method) UQ() (cuqi.problem.BayesianProblem method) (cuqi.testproblem.Abel1D method) (cuqi.testproblem.Deconvolution1D method) (cuqi.testproblem.Deconvolution2D method) (cuqi.testproblem.Heat1D method) (cuqi.testproblem.Poisson1D method) (cuqi.testproblem.WangCubic method)

UserDefinedDistribution (class in cuqi.distribution) UserDefinedLikelihood (class in cuqi.likelihood)

V

validate_proposal() (cuqi.experimental.mcmc.CWMH method) (cuqi.experimental.mcmc.MH method) (cuqi.experimental.mcmc.ProposalBasedSampler method) validate_target() (cuqi.experimental.mcmc.Conjugate method) (cuqi.experimental.mcmc.ConjugateApprox method) (cuqi.experimental.mcmc.CWMH method) (cuqi.experimental.mcmc.Direct method) (cuqi.experimental.mcmc.LinearRTO method) (cuqi.experimental.mcmc.MALA method) (cuqi.experimental.mcmc.MH method) (cuqi.experimental.mcmc.MYULA method) (cuqi.experimental.mcmc.NUTS method) (cuqi.experimental.mcmc.PCN method) (cuqi.experimental.mcmc.PnPULA method) (cuqi.experimental.mcmc.ProposalBasedSampler method) (cuqi.experimental.mcmc.RegularizedLinearRTO method) (cuqi.experimental.mcmc.Sampler method) (cuqi.experimental.mcmc.UGLA method) (cuqi.experimental.mcmc.ULA method) validate_targets() (cuqi.experimental.mcmc.HybridGibbs method) values() (cuqi.samples.JointSamples method) var() (cuqi.array.CUQIarray method) variables (cuqi.geometry.Continuous property) (cuqi.geometry.Continuous1D property) (cuqi.geometry.Continuous2D property) (cuqi.geometry.CustomKL property) (cuqi.geometry.Discrete property) (cuqi.geometry.Geometry property) (cuqi.geometry.Image2D property) (cuqi.geometry.KLExpansion property) (cuqi.geometry.KLExpansion_Full property) (cuqi.geometry.MappedGeometry property) (cuqi.geometry.StepExpansion property)

variance() (cuqi.samples.Samples method) vec2fun() (cuqi.geometry.Continuous method) (cuqi.geometry.Continuous1D method) (cuqi.geometry.Continuous2D method) (cuqi.geometry.CustomKL method) (cuqi.geometry.Discrete method) (cuqi.geometry.Geometry method) (cuqi.geometry.Image2D method) (cuqi.geometry.KLExpansion method) (cuqi.geometry.KLExpansion_Full method) (cuqi.geometry.MappedGeometry method) (cuqi.geometry.StepExpansion method) vector (cuqi.samples.Samples property) view() (cuqi.array.CUQIarray method)

W

WangCubic (class in cuqi.testproblem) warmup() (cuqi.experimental.mcmc.Conjugate method) (cuqi.experimental.mcmc.ConjugateApprox method) (cuqi.experimental.mcmc.CWMH method) (cuqi.experimental.mcmc.Direct method) (cuqi.experimental.mcmc.HybridGibbs method) (cuqi.experimental.mcmc.LinearRTO method) (cuqi.experimental.mcmc.MALA method) (cuqi.experimental.mcmc.MH method) (cuqi.experimental.mcmc.MYULA method) (cuqi.experimental.mcmc.NUTS method) (cuqi.experimental.mcmc.PCN method) (cuqi.experimental.mcmc.PnPULA method) (cuqi.experimental.mcmc.ProposalBasedSampler method) (cuqi.experimental.mcmc.RegularizedLinearRTO method) (cuqi.experimental.mcmc.Sampler method) (cuqi.experimental.mcmc.UGLA method) (cuqi.experimental.mcmc.ULA method)

WRITEABLE (in module cuqi.array) WRITEBACKIFCOPY (in module cuqi.array)