Direct

class cuqi.experimental.mcmc.Direct(target=None, initial_point=None, callback=None)

Direct sampler

This sampler is used to sample from a target distribution directly. It simply calls the sample method of the target object to generate a sample.

Parameters:

target (Distribution) – The target distribution to sample from.

__init__(target=None, initial_point=None, callback=None)

Initializer for abstract base class for all samplers.

Any subclassing samplers should simply store input parameters as part of the __init__ method.

The actual initialization of the sampler should be done in the _initialize method.

Parameters:

• target (cuqi.density.Density) – The target density.

• initial_point (array-like, optional) – The initial point for the sampler. If not given, the sampler will choose an initial point.

• callback (callable, optional) – A function that will be called after each sample is drawn. The function should take two arguments: the sample and the index of the sample. The sample is a 1D numpy array and the index is an integer. The callback function is useful for monitoring the sampler during sampling.

Methods

__init__([target, initial_point, callback])	Initializer for abstract base class for all samplers.
get_history()	Return the history of the sampler.
get_samples()	Return the samples.
get_state()	Return the state of the sampler.
initialize()	Initialize the sampler by setting and allocating the state and history before sampling starts.
load_checkpoint(path)	Load the state of the sampler from a file.
reinitialize()	Re-initialize the sampler.
sample(Ns[, batch_size, sample_path])	Sample Ns samples from the target density.
save_checkpoint(path)	Save the state of the sampler to a file.
set_history(history)	Set the history of the sampler.
set_state(state)	Set the state of the sampler.
step()	Perform one step of the sampler by transitioning the current point to a new point according to the sampler's transition kernel.
tune(skip_len, update_count)	Tune the parameters of the sampler.
validate_target()	Validate the target is compatible with the sampler.
warmup(Nb[, tune_freq])	Warmup the sampler by drawing Nb samples.

Attributes

dim	Dimension of the target density.
geometry	Geometry of the target density.
target	Return the target density.